Brandon Rose, MD, MPH
Founder of TheCodingDocs
Internal Medicine Resident at UM/JMH
5 years of coding experience, mostly in R
Fire Fighter Cancer Cohort Study - Data Analyst and Shiny App Developer
Admissions committee at UM (AMCAS Data Exchange Services), custom plotting library creator and data analyst
Sarcoma research
UK BioBank research with NIH NCI DCEG ITEB
Interests - data visualization, interactive dashboards, package development, shiny apps
Ongoing Projects
PSDB - Pan-Sarcoma DataBase in development (based on rosyredcap)
LCDB - Lung Cancer DataBase in development (based on rosyredcap)
rosyredcap - Rosy REDCap R package
Who: anyone wanting to make an R database object from a REDCap project
What: public R package; imports and organized REDCap data for
Why: select custom ICD10 codes for data brokers
Where: https://github.com/brandonerose/rosyredcap
rosyicd10 - Rosy ICD10 R Shiny App (LIVE)
Who: anyone wanting to explore and save ICD10 codes (2023)
What: public R package; displays all ICD10 codes, exports your results
Why: select custom ICD10 codes for data brokers
Where: https://brandonerose.shinyapps.io/rosyicd10/ (live app)
Where: https://github.com/brandonerose/rosyicd10 (R package to run on your PC)
Where: https://github.com/brandonerose/rosyicd10_simple (R project example to learn shiny)
FCI - Firefighter Cancer Initiative R package and shiny app
Who: University of Miami Firefighter Cancer Initiative
What: Private research R package; uses REDCap API for multiple studies; uses plotly, shiny, and more
Why: data quality control, REDCap cleaning, research analysis, increase participant compliance
MIA - Miller Interactive Admissions
Who: University of Miami Admissions Committee
What: private R package; performs cURL from AMCAS; ggplot2 and plotly for visuals ; also shiny
Why: data manipulation and visualization of admissions data
RUN - willing to share if I wanted to release a shiny example that uses API
Who: personal for now
What: private (?future public) R package; uses Strava API ; uses rnoaa, shiny, and more
Why: transform, track, and analyze running data from multiple sources to add weather, weight, plots
Past Projects
Contributed as second author to "Incident disease associations with mosaic chromosomal alterations on autosomes, X and Y chromosomes: insights from a phenome-wide association study in the UK Biobank" - https://cellandbioscience.biomedcentral.com/articles/10.1186/s13578-021-00651-z
Contributed to the graphics for "A prosection-based surgical anatomy training session that improves medical student anatomical knowledge and confidence on the surgery clerkship" - https://link.springer.com/article/10.1007/s44186-022-00074-5#Sec11 - "Thank you to Brandon Rose, MD, MPH (TheCodingDocs.com) for his help in using RStudio to create the figures for this project."
MPH thesis project managing data for University of Miami SPARK-C https://umiamihealth.org/en/coronavirus/spark-c
Contributed as the second author to "KIT resistance mutations identified by circulating tumor DNA and treatment outcomes in advanced gastrointestinal stromal tumor." https://ascopubs.org/doi/abs/10.1200/JCO.2022.40.16_suppl.11514
Contributed as third author to "DNA damage response pathways in synovial sarcoma." https://ascopubs.org/doi/abs/10.1200/JCO.2022.40.16_suppl.11580
Presented at the 2023 International Firefighter Cancer Symposium "Personalized cancer screening recommendations in firefighters using basic research data and open-source coding: a scalable and customizable model for most research projects." 3rd place poster.
Presented at the 2023 Inaugural Computing Day at the University of Miami
